CDS

Accession Number TCMCG015C04636
gbkey CDS
Protein Id XP_027086599.1
Location complement(join(40489917..40490309,40490975..40491133,40491507..40491609,40491710..40491790,40492492..40492568,40492647..40492718,40492819..40492895,40493937..40493997,40494364..40494461,40495124..40495231,40495795..40496075,40496163..40496228,40496337..40496416,40497565..40497737,40498151..40498182,40498306..40498466,40498924..40499088,40499196..40499260,40500389..40500517,40501707..40501813,40502387..40502510,40503221..40503299,40504114..40504213,40504919..40505001,40505145..40505195,40505372..40505682,40505761..40505851,40506789..40506983))
Gene LOC113708330
GeneID 113708330
Organism Coffea arabica

Protein

Length 1173aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA506972
db_source XM_027230798.1
Definition tRNA ligase 1-like isoform X2 [Coffea arabica]

EGGNOG-MAPPER Annotation

COG_category S
Description atrnl,rnl
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000278        [VIEW IN EMBL-EBI]
GO:0000281        [VIEW IN EMBL-EBI]
GO:0000394        [VIEW IN EMBL-EBI]
GO:0000910        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003972        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006388        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006399        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008033        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008356        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0008452        [VIEW IN EMBL-EBI]
GO:0009790        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009793        [VIEW IN EMBL-EBI]
GO:0009966        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010069        [VIEW IN EMBL-EBI]
GO:0010070        [VIEW IN EMBL-EBI]
GO:0010154        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010646        [VIEW IN EMBL-EBI]
GO:0010928        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016874        [VIEW IN EMBL-EBI]
GO:0016886        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0023051        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0042245        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048316        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051301        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0061640        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1903047        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTTGTCGAGGGGGCTGGTTTCTCAGAGAATATTCTCTGGTTTCACTCTAGCACTCTATTCTCGTTCTTCTTCCTCTTCGCATTATCATTCTTCACCTCATCATCTAATTTCTTCCAGAAGCTTTCTTCTTCTCCGGTCTCGCTCCATCTCTTTCAGCAGCTCACTGGTTCACTCCACCATGCAACGGAAACAGCCAAGGAGTGCAGCTAGAGGACAAAGATGGATAGAGAAGCCAAAATCTGACAGGCCTTCATCAACTGCGAAAGAGGTTTCTTCTGTAGGAGATCAACAGTTTGCCGGGGTAGGATTGGTGAACAACAATCCGAGACAGGGCGTTTGGGAGACGAAGTCATATGGAACAACAAGTGGGGCAACGGCTGTAGAAGTTGAAAAAGGACCAGCTGCTCAAGTGGTGGGTCCGGCTCAGGGGGGTGAAGCTCAAGCAGCATCAGGTGGATTAAATAATGCTGTCTTGAGCAAATTGTTTAAGGGTAATTTACTGGACAACTTCACTGTGGACAATTCAACATACTCGCATGCGCAAATAAGAGCTACCTTTTACCCCAAATTTGAAAATGAGAAGTCTGATCATGAGATTAGAGTAAGAATGATAGAGATGGTGTCGAAAGGCTTGGCCACATTGGAGGTATCACTCAAGCATTCTGGATCTCTTTTCATGTATGCTGGACATGAGGGAGGAGCATATGCTAAGAACAGCTTTGGCAACGTTTACACTGCTGTTGGTGTTTTTGTGCTTGGGAGGACTTTTCACAAGGCATGGGGTGCTCAAGCAACCAAGAAGCAAGCAGAGTTCAATGAATTTCTCAATCGGAATCGCATGTGCATATCAATGGAACTGGTAACTGCTGTACTAGGAGACCATGGACAACGTCCTCGAGAAGATTATGTGGTTGTGACAGCAGTCACAGAATTGGGCATTGGGAGACCAAAATTTTATTCTACTCCAGAAATAATAGCTTTTTGCCGGAAGTGGCGTCTTCCAACAAATCATGTCTGGTTGCTCTCCACCAGGAAGTCGGTGACATCCTTTTTTGCTGCATACGATGCATTGTGTGAAGAAGGAACAGCATCTCCTGTTTGTCAGGCTCTTGACGAAGTTGCAGATATATCTGTTCCAGGATCAATAGACCACATAAAGGTACAAGGCGAAATTTTAGAAGGTCTTGTGGCTCGCATAGTAAGCCATGAAAGTTCAAAAGACATGGAACAAGTTCTAAGGGATTTTCCTTTACCTACTGTGGATGAAGATGCAAAAGATTTAGGAGCTAGCCTGCGAGAAATTTGTGCTGCAAATAGATCTGATGAGAAGCAGCAAATCAAGGCACTTCTGCAGAGCGTTGGCACTTCCTTCTGCCCAAACTATCTGGATTGGTTTGGGAATGAAGGGTCCGACCCACATTCAAGAAATGTTGATCGTTCGGCTCTTACAAAGTTCCTGCAAGCACAGCCTGCTGATTTTTCTACAATAAAGTTGCAGGAAATGATTCGCTTGATGCGCGAAAACCGCTATCCAGCTGCTTTTAAATTGTACCATAACTATCAAAAGATCAACTCTGTCTCTAGCAATAATCTTCATTTCAAAATGGTGATCCATGTACACAGTGATTCAGCATTTCGGCGATATCAAAAAGAGATGAGGAACAAACCAGGACTGTGGCCACTTTATCGAGGTTTCTTTGTCGACTTAAACTTATTCAAGGCAGACAAGGAAAAGGCTGCTGAAATTGCTGGAACGGAGAAGGGTGCAAAAAAAGTTGATGAGAATAATGGCACTTTCACAAATGAGAGTTTAGCTGATGAAGATGCAAATCTGATGATCAAGTTGAAATTTCTCACATATAAGTTGCGAACCTTTTTGATCAGGAATGGCTTGTCTATTCTCTTTAAAGAAGGTCCATCTGCCTACAAAGCCTACTATTTGAGACAAATGAAGATATGGAATACTTCACCTACAAAGCAAAGGGAATTGAGCAAAATGCTCGATGAATGGGCAGTATACATACGCAGAAAGTATGGACACAAAATGCTGTCTTCTTCTGTATACCTTAGTGAGGCTGAGCCTTTTCTGGAGCAATATGCAAAGCGCAGTCCACAAAATCAAGCTTTGATAGGATCTGCTGGAAACTTAGTAAGATCAGAAGACTTCTTGGCCATTATTGAGGGAGGAAGAGATGAAGAGGGTGACCTTGAGCAAGAGAGGGATGCAGGACCAGTAACTACAGTTAAGGACAGAGTTGCCAAGGATGAGGGCCTCATTGTCTTCTTTCCAGGAATACCTGGTTGTGCAAAATCTGCGCTTTGTAGGGAAATTTTAAATGCCCCTGGAGTCCTTGAGGATGACCGACCAGTTAACACTTTGATGGGTGATCTTATAAAAGGTAGGTATTGGCAGAAGGTTGCTGATGAACGCCGGAGAAAGCCTTATTCGATAATGCTTGCCGACAAGAATGCACCGAACGAGGAAGTTTGGAAACAGATTGAGGACATGTGCCGACGCACCAAAGCTTCTGCAGTTCCGGTCGTACCAGATTCAGAAGGAACCGAATCAAATCCATTTTCACTTGACGCACTTGCTGTTTTCATACATCGAGTGCTTCGCCGTGTTAATCATCCGGGGAACCTTGACAAGTCCTCTCCAAATGTTGGCTATGTGTTGCTGATGTTTTACCACCTTTACCAGGGCAAGAGCCGCAAGGAGTTTGAGGCCGAGTTAATTGAACGTTTTGGCTCTCTTGTGAAGATGCCTTTACTGAAGCCTAATAGGTCTCCTCTACCTGTTTCTGTGAGTTCTGTTTTGGAAGAGGGGATAAACCTGTACAAGCTTCACACAATCAGGCATGGAAGATTGGAGTCAACCAAAGGAACCTATGCAACAGAATGGACTAAATGGGAGAAGGAATTGCGAGAGATTTTATCAAGCAATTCTGAGTACCTTGATTCGGTGCAGGTTCCATTTGAATTTGCTGTCAAGCAAGTCTTGGAACAACTAAAAGCAGTTGCAAAGGGTGAGTATTCAGCACCAGTAATTGAGAAAAGAAGGCTTGGGGCTATTGTATACGCTGCTGTGAGTTTGCCTGTTGCAGAAATCCATGAATTCCTCCAAAGGATAGCTGAGAAGGATCCTGACGTTGAAACCTTCTTCAAGGAGAAAAACCTGAAGGATAGTCTCACAAAAGCTCATGTGACGCTGGCTCACAAGAGAAGTCATGGTGTTACTGCTGTTGCAAATTATGGCTCGTTTCTTAATCAAAAGGTACCTGTGGATATAACTGCGCTACTATTTTCTGGGAAATTGGCAGCATTAGAAGCTCACACAGGCTCGGTAAATGGTGAAAAGATAACTTCTAAAAACCAGTGGCCTCATGTCACATTATGGACTGGTGAAGGAGTTGCAGCCAAAGATGCCAACGCATTGCCACAGTTAGTTACGGAAGGGAAGGCTACTCGTGTAGGGATTGATCCCCCCATCACGATAACTGGCGTCCTACAATTCTTTTAA
Protein:  
MLSRGLVSQRIFSGFTLALYSRSSSSSHYHSSPHHLISSRSFLLLRSRSISFSSSLVHSTMQRKQPRSAARGQRWIEKPKSDRPSSTAKEVSSVGDQQFAGVGLVNNNPRQGVWETKSYGTTSGATAVEVEKGPAAQVVGPAQGGEAQAASGGLNNAVLSKLFKGNLLDNFTVDNSTYSHAQIRATFYPKFENEKSDHEIRVRMIEMVSKGLATLEVSLKHSGSLFMYAGHEGGAYAKNSFGNVYTAVGVFVLGRTFHKAWGAQATKKQAEFNEFLNRNRMCISMELVTAVLGDHGQRPREDYVVVTAVTELGIGRPKFYSTPEIIAFCRKWRLPTNHVWLLSTRKSVTSFFAAYDALCEEGTASPVCQALDEVADISVPGSIDHIKVQGEILEGLVARIVSHESSKDMEQVLRDFPLPTVDEDAKDLGASLREICAANRSDEKQQIKALLQSVGTSFCPNYLDWFGNEGSDPHSRNVDRSALTKFLQAQPADFSTIKLQEMIRLMRENRYPAAFKLYHNYQKINSVSSNNLHFKMVIHVHSDSAFRRYQKEMRNKPGLWPLYRGFFVDLNLFKADKEKAAEIAGTEKGAKKVDENNGTFTNESLADEDANLMIKLKFLTYKLRTFLIRNGLSILFKEGPSAYKAYYLRQMKIWNTSPTKQRELSKMLDEWAVYIRRKYGHKMLSSSVYLSEAEPFLEQYAKRSPQNQALIGSAGNLVRSEDFLAIIEGGRDEEGDLEQERDAGPVTTVKDRVAKDEGLIVFFPGIPGCAKSALCREILNAPGVLEDDRPVNTLMGDLIKGRYWQKVADERRRKPYSIMLADKNAPNEEVWKQIEDMCRRTKASAVPVVPDSEGTESNPFSLDALAVFIHRVLRRVNHPGNLDKSSPNVGYVLLMFYHLYQGKSRKEFEAELIERFGSLVKMPLLKPNRSPLPVSVSSVLEEGINLYKLHTIRHGRLESTKGTYATEWTKWEKELREILSSNSEYLDSVQVPFEFAVKQVLEQLKAVAKGEYSAPVIEKRRLGAIVYAAVSLPVAEIHEFLQRIAEKDPDVETFFKEKNLKDSLTKAHVTLAHKRSHGVTAVANYGSFLNQKVPVDITALLFSGKLAALEAHTGSVNGEKITSKNQWPHVTLWTGEGVAAKDANALPQLVTEGKATRVGIDPPITITGVLQFF